Can money buy happiness?  These people, waiting for hours to buy lottery tickets, seem to think so, or at least are willing to test the hypothesis (turn off your sound — the commentary is annoying):

What does science say?  The short answer is that money can buy happiness, at least up to a point.  The long answer is quite complicated.

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Recent discussions of genetic algorithms here and Dave Thomas’ evisceration of Winston Ewert’s review of several genetic algorithms at The Panda’s Thumb prompted me to dust off my notes and ev implementation.

Introduction

In the spring of 1984, Thomas Schneider submitted his Ph.D thesis demonstrating that the information content of DNA binding sites closely approximates the information required to identify the sites in the genome. In the week between submitting his thesis and defending it, he wrote a software simulation to confirm that the behavior he observed in biological organisms could arise from a subset of known evolutionary mechanisms. Specifically, starting from a completely random population, he used only point mutations and simple fitness-based selection to create the next generation.

The function of ev is to explain and model an observation about natural systems.
— Thomas D. Schneider

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In his endless pursuit of that wascally Weasel, Mung made the following silly claim:

GAs are often used to demonstrate “the power of cumulative selection.” Given small population sizes drift ought to dominate yet in GAs drift does not dominate.

That is clearly false, but for the benefit of Mung (and his cousin Elmer) I have modified my Weasel program to incorporate both drift and selection.  They can now see for themselves that small population sizes are insufficient to guarantee that drift dominates selection.

The code is here. Compile it under Linux using “gcc -std=gnu99 -lm weasel.c -o weasel”.

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My favorite subject-specific journal is Molecular Biology and Evolution (MBE).  This journal publishes on topics primarily related to molecular evolution and evolutionary genomics, which are among my favorite subjects in biology. I’m happy to report that the latest issue of MBE is out today, and there are lots of great articles that I think will be of interest to folks here, many of which are open-access.

I sadly don’t have time to write up any of these articles, but I thought it might be useful to “sample” a few in case any any of you would like to read and discuss them.  Here are a handful that seem particularly interesting:

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Cross-posted from UD: The Alternatives to Methodological Naturalism conference is doing a design contest with a cash prize.

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Paul Nelson, Evolution, or design ? I transcribed it for who is too lazy to see the video, but its worth to watch, a great speech:

Thanks to another reader, I have gotten a copy of McDonald’s actual paper. Reading it, I wonder how many of the Discovery Institute authors have actually read it. How many have just taken what one of their fellows said previously and done what most 10th grade students do for research papers (i.e. change a few words in an attempt to avoid plagiarism).

By adding their own interpretation of the prior authors work (using secondary sources instead of primary sources), quite a bit of error has crept in. I’m sure it’s just a bit of error, we all know that no creationist would say something that wasn’t true, especially if he is quoting an actual scientist’s paper.
No, I can’t do it, that level of sarcasm is too much for me. These people are liars. Either they are directly lying in order to make someone appear to say something that they actually didn’t or they are the worst researchers ever and shouldn’t be allowed to write non-fiction. Which is it creationists?

It was not merely Judge John E. Jones who ruled against teaching “intelligent design” (ID), a thinly veiled surrogate for “creation science,” in public schools. The citizens of Dover, Pennsylvania, exercised the power of the ballot to ensure that their city did not appeal Kitzmiller. If the case had reached the Supreme Court of the United States, the justices possibly would have split 5-4 in favor of allowing public schools to teach ID.

Today ID lost its prospect of winning in the Supreme Court: Justice Antonin Scalia, Known For Biting Dissents, Dies At 79. As noted in the Wikipedia article on Edwards v. Aguillard (1987), in which the court nailed shut the coffin of creation science,

Justice Antonin Scalia, joined by Chief Justice William Rehnquist, dissented, accepting the Act’s stated purpose of “protecting academic freedom” as a sincere and legitimate secular purpose. They construed the term “academic freedom” to refer to “students’ freedom from indoctrination”, in this case their freedom “to decide for themselves how life began, based upon a fair and balanced presentation of the scientific evidence”.

Has quite a familiar ring, doesn’t it? The rhetoric of the ID movement was designed by a law professor, Phillip Johnson, to suit a creationism-friendly judge of the Law of the Land. This is indeed a sad day for ID, which already had acquired a moribund pallor.

Even on his birthday, don’t say Darwin unless you mean it

How Darwin’s name is taken in vain, with mini-reviews of some of the worst offenders

Don’t say Darwin unless you mean it. Above all, don’t say “Darwin” when you mean “evolution”. It’s like saying “Dalton” when you mean atoms. Our understanding of atoms has moved on enormously since Dalton’s time, and our understanding of evolution has moved on similarly since Darwin’s. Neither of them knew, or could have known, the first thing regarding what they were talking about, and both would be delighted at how thoroughly their own work has been superseded. (Dalton of course deserves further discussion in his own right, which I will be providing in a few weeks time.)

From John Dalton’s A New System of Chemical Philosophy (1808)

Imagine if a lot of people decided that atomic theory was against their religion. We would see a parallel world of sacred science, in which molecules were “intelligently constructed”, and real chemistry would be referred to as Daltonism, or possibly, these days, neo-Daltonism. The scientific dissidents from Daltonism would invoke Dalton’s name on every possible occasion, and draw attention to the many inadequacies of atomic theory as he presented it in 1808.