Invited responses to my nylonase research and the question of “New Proteins Without God’s Help”

Susumo Ohno (who coined the term “junkDNA”) published a paper in 1984 through the National Academy of Sciences that was used by the NCSE, Ken Miller and Dennis Venema to claim “proteins can evolve without God’s help”. At the request of John Sanford, a courtesy associate research professor at Cornell, I was recruited to write a paper to refute Ohno’s evolutionary hypothesis on nylonases. I wrote it under John’s guidance based on his intuitions about genetics, his life-long specialty of 40 years and for which he became famous as attested by the fact he is one of the few geneticists who had their work featured in the Smithsonian National Museum of American History.

The actual paper is now in review, but it is not intended to be published in any journal, but will be released in a variety of channels shortly. It is hoped the material can be used by others to actually create papers that enter peer review. The motivation for releasing the paper in this way is to counter Venema’s book while it is still hot off the press.
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The Mysteries of Evolution: 4. How did we get here…

…from: “having been originally breathed by the Creator into a few forms or into one”?

Welcome all after vacation!

I have been reviewing many different articles recently and it hit me like a bolt of lighting: How did materialist who promote the Darwinian theory of evolution get to spontaneous emergence of life from what Darwin himself wrote in the Origin of Species:

“There is grandeur in this [natural selection] view of life, with its several powers, having been originally breathed by the Creator into a few forms or into one; and that, whilst this planet has gone cycling on according to the fixed law of gravity, from so simple a beginning endless forms most beautiful and most wonderful have been, and are being evolved”

One would think that scientific, experimental evidence convinced Darwinists to change their mind… Unfortunately, just like many of my posts and comments have revealed, no such evidence has emerged…. So, my question is: what prompted the Darwiwnists to change the fundamental idea about the origins of life originally written by Darwin himself, if no evidence for such a change exists?

Why Gradualism?

In Why Evolution is True, Jerry Coyne writes that gradualism is one of the six tenets of “the modern theory of evolution” (which he equates with Darwinism – see page 3).

Eugene Koonin writes that the tenet of gradualism is known to be false (The Logic of Chance p. 398).

Yet gradualism is obviously still quite popular here in “The Skeptical Zone.”

Surely gradualism is not a logical requirement or entailment of the theory of evolution. Neither is it supported by the evidence.

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Eye Mock Stupidity

I’m all in favor of mocking stupidity, and here’s something definitely worth mocking.

In arguing for evolution, author Alan R. Rogers appeals to the Nilsson and Pelger paper on how simple it is to evolve an eye. He writes:

If eyes evolve, they must do so often and easily. Could it really be so easy?

Dan-Eric Nilsson and Susanne Pelger have answered this question. They constructed an evolutionary story much like the one that I told above.

– The Evidence for Evolution. p. 42.

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Evolution is not design

This is a continuation of an earlier OP. Design by Evolution

When we think of design, it is usually in the context of solving some sort of problem, … To be effective, the design must address a purpose to be achieved. … Thus, effective design requires some feedback mechanism to the designer.

But perhaps we can fit the square peg of purposeless blind watchmaker evolution into the round hole of purposeful intelligent design.

Some people here at TSZ seem to think that no one ever claimed that evolution is a designer. So let’s remind them.

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Evo-Info 3: Evolution is not search


Introduction to Evolutionary Informatics, by Robert J. Marks II, the “Charles Darwin of Intelligent Design”; William A. Dembski, the “Isaac Newton of Information Theory”; and Winston Ewert, the “Charles Ingram of Active Information.” World Scientific, 332 pages.
Classification: Engineering mathematics. Engineering analysis. (TA347)
Subjects: Evolutionary computation. Information technology–Mathematics.

Marks, Dembski, and Ewert open Chapter 3 by stating the central fallacy of evolutionary informatics: “Evolution is often modeled by as [sic] a search process.” The long and the short of it is that they do not understand the models, and consequently mistake what a modeler does for what an engineer might do when searching for a solution to a given problem. What I hope to convey in this post, primarily by means of graphics, is that fine-tuning a model of evolution, and thereby obtaining an evolutionary process in which a maximally fit individual emerges rapidly, is nothing like informing evolution to search for the best solution to a problem. We consider, specifically, a simulation model presented by Christian apologist David Glass in a paper challenging evolutionary gradualism à la Dawkins. The behavior on exhibit below is qualitatively similar to that of various biological models of evolution.

Animation 1. Parental populations in the first 2000 generations of a run of the Glass model, with parameters (mutation rate .005, population size 500) tuned to speed the first occurrence of maximum fitness (1857 generations, on average), are shown in orange. Offspring are generated in pairs by recombination and mutation of heritable traits of randomly mated parents. The fitness of an individual in the parental population is, loosely, the number of pairs of offspring it is expected to leave. In each generation, the parental population is replaced by surviving offspring. Which of the offspring die is arbitrary. When the model is modified to begin with a maximally fit population, the long-term regime of the resulting process (blue) is the same as for the original process. Rather than seek out maximum fitness, the two evolutionary processes settle into statistical equilibrium.

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For VJ Torley: Christianity’s consistency with Evolutionary Theory, JB Peterson’s Interview

Various creationists and ID proponents, myself included, have raved about the work of elite scholar and clinical psychologist Jordan B. Peterson who connected the rise of Christianity with concepts in evolutionary theory. His recent 2.5-hour interview was profound on many levels. I provide a link to the interview below.

Even though Peterson is an die-hard evolutionist, many ID proponents and creationists have said they were blessed to hear what he had to say. I know I was. Since I know VJ studied the topic of animal intelligence, I thought Peterson’s work might be of interest to him since Peterson ties the rise of Christianity to behavioral and neurological traits he sees deeply conserved in the mammalian kingdom.
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Were some “types” of “dinosaurs” like Theropods/T-rex, simply ground birds that adapted to a diverse planet??

I wrote a thread once about Theropods having like anatomy with birds as possibly just a convergence of bone type with physics. So birds did not evolve from dinosaur types like theropods.

I have watched recently youtube docs on T-rex and theropods etc and how they are claimed to be birds.

Once again its ac classification error. First there was no dinosaurs. tHey are just KINDS with some trivial like traits. just as mammals or reptiles are just KINDS of creatures with like traits. no relationship otherwise from a creator ir from evolutionary lineage.

It occured to me as another option that these theropods and T-rex could be simply ground birds.

there was later, post flood or above the k-pg line, 6 and 9 foot moas and elephant birds on islans like New Zealand and madasgaschar, and South America, and elsewhere.

They also were meat eaters, sometimes, and could not fly or even had wings/yet flourished in great sizes.

I think its a very viable option that many KINDS of dinos who have very bird like anatomy were in fact just ground birds. So T-rex, despite its great head/teeth, was possibly just a ground bird that did not roar. I saw a Youtube doc by a Dino guy, who advised the Jurassic park movies, who argues T-Rex etc head shape changed greatly as they grew older.

I suggest its very likely true that some ‘dino” types like the bird bone ones were just birds. Not reptiles. Just adapted to a rough post fall world. Just that simple. Possible also for others to have like anatomy for like needs but I’m leaning towards like anatomy means the same thing.

So the evolution of birds from dinos is not true and based on a classification system more then observation and other options of anatomy origins.