The Mysteries of Evolution: 4. How did we get here…

…from: “having been originally breathed by the Creator into a few forms or into one”?

Welcome all after vacation!

I have been reviewing many different articles recently and it hit me like a bolt of lighting: How did materialist who promote the Darwinian theory of evolution get to spontaneous emergence of life from what Darwin himself wrote in the Origin of Species:

“There is grandeur in this [natural selection] view of life, with its several powers, having been originally breathed by the Creator into a few forms or into one; and that, whilst this planet has gone cycling on according to the fixed law of gravity, from so simple a beginning endless forms most beautiful and most wonderful have been, and are being evolved”

One would think that scientific, experimental evidence convinced Darwinists to change their mind… Unfortunately, just like many of my posts and comments have revealed, no such evidence has emerged…. So, my question is: what prompted the Darwiwnists to change the fundamental idea about the origins of life originally written by Darwin himself, if no evidence for such a change exists?

Why Gradualism?

In Why Evolution is True, Jerry Coyne writes that gradualism is one of the six tenets of “the modern theory of evolution” (which he equates with Darwinism – see page 3).

Eugene Koonin writes that the tenet of gradualism is known to be false (The Logic of Chance p. 398).

Yet gradualism is obviously still quite popular here in “The Skeptical Zone.”

Surely gradualism is not a logical requirement or entailment of the theory of evolution. Neither is it supported by the evidence.

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Granville Sewell’s argument for Intelligent Design

Over at Evolution News, mathematician Granville Sewell has written an article titled, From Barren Planet to Civilization — Four Simple Steps (July 27, 2017). My intention in writing this post is not to critique Dr. Sewell’s latest argument, but to clarify its premises. Sewell’s own comments reveal that it is ultimately a philosophical argument, rather than a scientific one. Although I agree with Dr. Sewell’s key intuition, I contend that his argument hinges on two assumptions: that unguided processes have a snowball’s chance in hell of giving rise to factories, and that mental states do not supervene upon physical states.

The bulk of this post will be devoted to what Dr. Sewell has written in his latest Evolution News article. At the end of my post, I will briefly comment on the thermodynamic arguments in his accompanying video, which I see as peripheral to Sewell’s main point.

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Eye Mock Stupidity

I’m all in favor of mocking stupidity, and here’s something definitely worth mocking.

In arguing for evolution, author Alan R. Rogers appeals to the Nilsson and Pelger paper on how simple it is to evolve an eye. He writes:

If eyes evolve, they must do so often and easily. Could it really be so easy?

Dan-Eric Nilsson and Susanne Pelger have answered this question. They constructed an evolutionary story much like the one that I told above.

– The Evidence for Evolution. p. 42.

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How ENV muddies the waters on the evidence for human evolution

Recently, Evolution News and Views published an article titled, The Human-Ape Missing Link — Still Missing (July 18, 2017), which attempts to cast doubt on human evolution by quoting from a recent BBC article which highlighted the massive uncertainties that still remain over the identity, appearance and date of the last common ancestor (LCA) of human beings and chimpanzees, and which even questions whether the chimpanzee is our closest relative, after all. The Evolution News and Views (ENV) article also revives the myth of an unbridgeable gap between Australopithecus and Homo.

Here’s my two-sentence rebuttal: uncertainty as to who the last common ancestor of humans and chimps was, what it looked like, and when it lived, in no way diminishes scientists’ certainty that it existed. And while the fossil record of human ancestors is very meager and patchy until about 4.4 million years ago, from that time onward, we have a veritable hodgepodge of hominins – and no unbridgeable gaps.

Well, that was quick, wasn’t it? Now for a more detailed rebuttal.

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Suffer the children

During the past few days, there has been much discussion of philosophy professor Gary Comstock’s spirited defense of infanticide, in the case of a severely handicapped newborn baby who is likely to die (New York Times, July 12, 2017). Such an infant, argues Comstock, lacks “the things that make a life: thoughts, wants, desires, interests, memories, a future.” And if did have thoughts, its dominant thought about being kept alive on a respirator would surely be: “This hurts. Can’t someone help it stop?”

Bioethicist Wesley Smith has pointed out that the case described by Comstock (who is not a doctor), of an infant suffering excruciating pain as its life is needlessly prolonged, is totally fictitious: “When life support is removed, doctors do not just let patients twist choking in the wind. They palliate — as necessary to alleviate pain and agitation.” The testimony of palliative care physician Ira Byock (whom Smith mentions in his article) is well worth citing: “In more than 35 years of practice I have never once had to kill a patient to alleviate the person’s suffering. When other measures fail, palliative sedation for alleviation of physical suffering is reliably effective. Alleviating suffering is different than eliminating the sufferer.” (Maryland Medicine vol. 17, no. 4; January 2017.) And Dr. Michael Egnor, commenting on Comstock’s article for Evolution News and Views, writes: “The notion that handicapped children intractably suffer is a lie. I’ve treated thousands of these kids. Most of the conditions that cause severe neurological impairment aren’t painful and don’t inherently cause physical suffering. Spina bifida, holoprosencephaly, various trisomies and anencephaly don’t ‘hurt,’ and in fact the children afflicted are often quite content babies. They are loved by their families, and they can enjoy life in accordance with their physical limitations.”

Wesley Smith and Michael Egnor point out that infanticide is a crime against humanity, for which doctors were hanged at Nuremberg. Some of these doctors had euthanized handicapped children. Both authors make a telling point; nevertheless, the question needs to be addressed: exactly why is infanticide wrong?

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Evolution is not design

This is a continuation of an earlier OP. Design by Evolution

When we think of design, it is usually in the context of solving some sort of problem, … To be effective, the design must address a purpose to be achieved. … Thus, effective design requires some feedback mechanism to the designer.

But perhaps we can fit the square peg of purposeless blind watchmaker evolution into the round hole of purposeful intelligent design.

Some people here at TSZ seem to think that no one ever claimed that evolution is a designer. So let’s remind them.

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Evo-Info 3: Evolution is not search

Introduction to Evolutionary Informatics, by Robert J. Marks II, the “Charles Darwin of Intelligent Design”; William A. Dembski, the “Isaac Newton of Information Theory”; and Winston Ewert, the “Charles Ingram of Active Information.” World Scientific, 332 pages.
Classification: Engineering mathematics. Engineering analysis. (TA347)
Subjects: Evolutionary computation. Information technology–Mathematics.

Marks, Dembski, and Ewert open Chapter 3 by stating the central fallacy of evolutionary informatics: “Evolution is often modeled by as [sic] a search process.” The long and the short of it is that they do not understand the models, and consequently mistake what a modeler does for what an engineer might do when searching for a solution to a given problem. What I hope to convey in this post, primarily by means of graphics, is that fine-tuning a model of evolution, and thereby obtaining an evolutionary process in which a maximally fit individual emerges rapidly, is nothing like informing evolution to search for the best solution to a problem. We consider, specifically, a simulation model presented by Christian apologist David Glass in a paper challenging evolutionary gradualism à la Dawkins. The behavior on exhibit below is qualitatively similar to that of various biological models of evolution.

Animation 1. Parental populations in the first 2000 generations of a run of the Glass model, with parameters (mutation rate .005, population size 500) tuned to speed the first occurrence of maximum fitness (1857 generations, on average), are shown in orange. Offspring are generated in pairs by recombination and mutation of heritable traits of randomly mated parents. The fitness of an individual in the parental population is, loosely, the number of pairs of offspring it is expected to leave. In each generation, the parental population is replaced by surviving offspring. Which of the offspring die is arbitrary. When the model is modified to begin with a maximally fit population, the long-term regime of the resulting process (blue) is the same as for the original process. Rather than seek out maximum fitness, the two evolutionary processes settle into statistical equilibrium.

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Introduction to Evolutionary Informatics

Introduction to Evolutionary Informatics, by Robert J. Marks II, the “Charles Darwin of Intelligent Design”; William A. Dembski, the “Isaac Newton of Information Theory”; and Winston Ewert, the “Charles Ingram of Active Information.” World Scientific, 332 pages.
Classification: Engineering mathematics. Engineering analysis. (TA347)
Subjects: Evolutionary computation. Information technology–Mathematics.1

Yes, Tom English was right to warn us not to buy the book until the authors establish that their mathematical analysis of search applies to models of evolution.

But some of us have bought (or borrowed) the book nevertheless. As Denyse O’Leary said: It is surprisingly easy to read. I suppose she is right, as long as you do not try to follow their conclusions, but accept it as Gospel truth.

In the thread Who thinks Introduction to Evolutionary Informatics should be on your summer reading list? at Uncommon Descent, there is a list of endorsements – and I have to wonder if everyone who endorsed the book actually read it. “Rigorous and humorous”? Really?

Dembski, Marks, and Ewert will never explain how their work applies to models of evolution. But why not create at list of things which are problematic (or at least strange) with the book itself? Here is a start (partly copied from UD):
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Clever methodology aimed at detecting ‘stealth atheism’

From an article in Vox entitled How many American atheists are there really?

How to find “closet atheists”

So if you can’t ask people outright whether they’re atheist and get an honest response, how do you go about finding them?

Gervais and Najle set up a very subtle test. They sent a nationally representative poll to 2,000 Americans, who were randomly assigned to two conditions.

The first condition asked participants to read through a bunch of statements like, “I am a vegetarian,” “I own a dog,” and, “I have a dishwasher in my kitchen.”

All the participants had to do was simply write down the number of statements that were true for them.

The value of this method is that participants don’t have to directly say, “I am a vegetarian,” or, “I’m a dog owner” — they only have to acknowledge the number of statements that apply to them. That alone should zero out any embarrassment or hesitance to admit to a particular item.

That’s important because the other 1,000 or so participants saw the exact same list — but with one statement added: “I believe in God.”

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Credulous PLOS One publishes evidence for body trauma on the Turin Shroud image

Mystic Post is a Website which publishes articles on Catholic visions (especially Medjugorje). It would be an understatement to say that its coverage tends to be rather uncritical, but from time to time, I take a look at it anyway. One thing I like about visionaries is that they make prophecies which are falsifiable, and Mystic Post has been throwing out very broad hints that something big may happen this year. A few hours ago, I came across an article on Mystic Post, titled, Breaking News – New Prestigious Study on Shroud of Turin…”There is blood of a man tortured and killed” (July 11, 2017). The article quoted extensively from a story by Andrea Tornielli, published in the printed edition of the Italian daily newspaper, La Stampa (July 1, 2017). To my great surprise, the opening paragraph cited a study which recently appeared in PLOS One (emphases are in the original):

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For VJ Torley: Christianity’s consistency with Evolutionary Theory, JB Peterson’s Interview

Various creationists and ID proponents, myself included, have raved about the work of elite scholar and clinical psychologist Jordan B. Peterson who connected the rise of Christianity with concepts in evolutionary theory. His recent 2.5-hour interview was profound on many levels. I provide a link to the interview below.

Even though Peterson is an die-hard evolutionist, many ID proponents and creationists have said they were blessed to hear what he had to say. I know I was. Since I know VJ studied the topic of animal intelligence, I thought Peterson’s work might be of interest to him since Peterson ties the rise of Christianity to behavioral and neurological traits he sees deeply conserved in the mammalian kingdom.
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The Problem of Predictive Equivalence

In the previous section I described the argument that many biologists have endorsed for thinking that the hypothesis of evolution by natural selection is more likely than the hypothesis of intelligent design. This argument considers the observation that organisms are often imperfectly adapted to their environments and construes the design hypothesis as predicting that organisms should be perfectly adapted. This version of the design hypothesis presupposes a very definite picture of what God would be like if he existed.

Actually, in the previous section Sober was primarily concerned with creationism. This is made rather obvious by the chapter title. It’s as if he was writing about Creationism and then Intelligent Design burst on the scene and he had to change things up to make it appear as if the two are the same. But what’s a philosopher of biology to do?

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Tamagotchi, J. K. Rowling and God: A Short Essay on the Problem of Evil

Catholic philosopher (and former atheist) Edward Feser might be many things, but he certainly isn’t dull. Nor is he afraid of grappling with the big questions. In the latest issue of First Things, he discusses the problem of evil in a wide-ranging interview with Connor Grubaugh, where he talks about his three favorite books in the field of contemporary analytic philosophy. Feser (who is Associate Professor of philosophy at Pasadena City College) is a Thomist, for whom the claim that the existence of evil and suffering constitutes evidence against God’s existence reflects a faulty conception of the relationship between creature and Creator. God is not just a Being who interacts with us on a personal level; rather, He is the very Author of our existence. And just as an author (such as J. K. Rowling) has no obligations to the characters in her stories, so too, God has no obligations towards us. Consequently there can be no question of Him ever doing us an injustice.

In today’s essay, I’d like to explain why I think Professor Feser’s solution is unsatisfactory, and why I think the problem of evil is much more serious than Feser supposes. I won’t be proposing my own solution, however. All I can do is briefly outline how I believe the problem can be defused, and why I don’t think it’s fatal for theism.

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